STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Birc6Baculoviral IAP repeat containing 6. (4824 aa)    
Predicted Functional Partners:
casp9
Caspase 9, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
   
 0.975
rnf41
Ring finger protein 41.
    
 0.970
LOC102081483
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.961
gabarap
Gamma-aminobutyric acid receptor-associated protein.
   
 0.947
map1lc3c
Microtubule-associated protein 1 light chain 3 gamma.
   
 0.945
LOC100701181
Microtubule-associated protein 1 light chain 3 gamma, like.
   
 0.945
LOC100697001
Gamma-aminobutyric acid receptor-associated protein-like 1.
   
 0.945
map1lc3b
Microtubule-associated protein 1 light chain 3 beta.
   
 0.943
map1lc3a
Microtubule-associated protein 1 light chain 3 alpha.
   
 0.943
hectd1
HECT domain containing 1.
   
 
 0.940
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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