STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acbd4Acyl-CoA binding domain containing 4. (350 aa)    
Predicted Functional Partners:
chst2
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.747
Pex14
Peroxisomal biogenesis factor 14.
   
 0.648
acbd3
Acyl-Coenzyme A binding domain containing 3.
   
  
 0.636
pald1
Phosphatase domain containing paladin 1a.
      
 0.627
pex16
Peroxisomal membrane protein PEX16.
   
 0.599
pex19
Peroxisomal biogenesis factor 19.
     
 0.591
LOC100705504
Synaptoporin.
   
  
 0.588
SYNPR
Synaptoporin.
   
  
 0.588
pex13
Peroxisomal biogenesis factor 13.
   
 0.586
depdc4
Si:ch211-265o23.1.
      
 0.583
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.