STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pabpn1Poly(A) binding protein, nuclear 1. (232 aa)    
Predicted Functional Partners:
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
  
0.919
PABPN1L
Embryonic polyadenylate-binding protein 2 isoform X2.
  
  
 
0.904
ENSONIP00000050617
Polyadenylate-binding protein 2-B-like.
  
  
 
0.904
LOC100704180
Poly(A) polymerase gamma.
   
 0.885
I3KNC8_ORENI
Uncharacterized protein.
   
 0.875
sap18
Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins.
   
 0.871
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.858
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
  
 0.857
LOC100706148
FIP1 like 1b (S. cerevisiae).
   
 0.852
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 0.840
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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