Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Pabpn1Poly(A) binding protein, nuclear 1. (232 aa)    
Predicted Functional Partners:
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.970
LOC100704180
Poly(A) polymerase gamma.
   
 0.946
LOC100707309
Serine and arginine rich splicing factor 9.
   
 0.943
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
    
  0.927
slu7
SLU7 homolog, splicing factor.
     
 0.920
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
     
  0.917
srsf7
Uncharacterized protein.
   
 0.914
ZFC3H1
Zinc finger C3H1-type containing.
    
 0.913
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
   
 0.882
PABPN1L
Embryonic polyadenylate-binding protein 2 isoform X2.
     
  0.866
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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