STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CluhClustered mitochondria protein homolog; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria. Specifically binds mRNAs of nuclear- encoded mitochondrial proteins in the cytoplasm and regulates transport or translation of these transcripts close to mitochondria, playing a role in mitochondrial biogenesis; Belongs to the CLU family. (1327 aa)    
Predicted Functional Partners:
trap1
TNF receptor-associated protein 1.
   
   0.791
pum1
Pumilio RNA-binding family member 1.
    
   0.758
cfap45
Cilia and flagella associated protein 45.
    
 
 0.740
I3KBQ4_ORENI
Uncharacterized protein.
      
 0.727
Prkn
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.
    
 
 0.709
gskip
Gsk3b interacting protein.
      
 0.673
Fam91a1
Family with sequence similarity 91 member A1.
      
 0.654
I3JWL9_ORENI
Heat shock protein b8; Belongs to the small heat shock protein (HSP20) family.
      
 0.646
dynlt1
Dynein, light chain, Tctex-type 1.
      
 0.645
lg7h12orf29
Zgc:103499.
      
 0.642
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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