STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scarf1Scavenger receptor class F, member 1. (957 aa)    
Predicted Functional Partners:
gulp1
GULP PTB domain containing engulfment adaptor 1a.
    
 0.932
LOC100691550
PID domain-containing protein.
    
 0.929
LOC100693084
C1q domain-containing protein.
     
  0.916
LOC100692629
C1q domain-containing protein.
     
  0.916
ino80d
INO80 complex subunit Da.
     
 0.730
slc30a5
Solute carrier family 30 member 5.
      
 0.692
LOC100710946
Folate receptor.
     
 0.691
LOC100697838
Rab-interacting lysosomal protein.
 
    
 0.687
LOC100700830
Transmembrane protein 216.
      
 0.686
cpd
Carboxypeptidase D, a.
      
 0.683
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.