Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slc46a1Solute carrier family 46 member 1. (492 aa)    
Predicted Functional Partners:
LOC100702086
C1q and TNF related 9.
     
 0.751
c1qtnf5
C1q and TNF related 5.
     
 0.751
gosr1
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
      
 0.695
LOC100697838
Rab-interacting lysosomal protein.
      
 0.694
cpd
Carboxypeptidase D, a.
      
 0.690
Fam98b
Family with sequence similarity 98 member B.
      
 0.652
scarf1
Scavenger receptor class F, member 1.
      
 0.652
LOC100694384
Crystallin, beta A1a; Belongs to the beta/gamma-crystallin family.
      
 0.645
pde3b
Phosphodiesterase.
      
 0.637
flvcr1
Feline leukemia virus subgroup C cellular receptor 1.
      
 0.575
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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