Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rtbdnZgc:109949. (277 aa)    
Predicted Functional Partners:
oxtr
RAD18 E3 ubiquitin protein ligase.
      
 0.576
rad17
RAD17 checkpoint clamp loader component.
      
 0.490
fancl
FA complementation group L.
      
 0.484
atp23
Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.
      
 0.440
LOC100711094
Cystatin domain-containing protein; Belongs to the cystatin family.
      
 0.410
I3KJT5_ORENI
Eph receptor B2a.
      
 0.410
I3KMT7_ORENI
Transmembrane serine protease 15; Belongs to the peptidase S1 family.
      
 0.409
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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