STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100694384Crystallin, beta A1a; Belongs to the beta/gamma-crystallin family. (203 aa)    
Predicted Functional Partners:
cryaa
Crystallin, alpha A; Belongs to the small heat shock protein (HSP20) family.
   
 
 0.952
LOC100709337
Crystallin, alpha B, a; Belongs to the small heat shock protein (HSP20) family.
   
 
 0.831
BFSP1
Beaded filament structural protein 1; Belongs to the intermediate filament family.
   
  
 0.725
LOC100703162
Crystallin, beta B2; Belongs to the beta/gamma-crystallin family.
   
 
 0.694
cpd
Carboxypeptidase D, a.
      
 0.678
gosr1
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
      
 0.660
bfsp2
Beaded filament structural protein 2, phakinin; Belongs to the intermediate filament family.
   
  
 0.649
slc46a1
Solute carrier family 46 member 1.
      
 0.645
LOC100697838
Rab-interacting lysosomal protein.
      
 0.643
LOC100703259
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.
   
  
 0.635
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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