Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100702538Zgc:154055. (548 aa)    
Predicted Functional Partners:
mtmr6
Myotubularin related protein 6.
   
 0.858
mtmr7
Myotubularin related protein 7a.
   
 0.856
LOC100712230
Myotubularin related protein 7b.
   
 0.856
ENSONIP00000071939
Cytidine deaminase.
    
   0.769
LOC100708867
EMILIN-1.
    
   0.762
LOC100707680
Elastin microfibril interfacer 1b.
    
   0.762
ccm2
CCM2 scaffold protein.
   
 
 0.647
mfhas1
Malignant fibrous histiocytoma amplified sequence 1.
    
 
 0.645
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
      
 0.633
mtmr3
Myotubularin related protein 3.
   
  0.596
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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