STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsrp1Uncharacterized protein. (327 aa)    
Predicted Functional Partners:
psme3ip1
Family with sequence similarity 192 member A.
    
   0.886
Tmem50a
Transmembrane protein 50A.
      
 0.758
LOC100703342
Rh blood group, D antigen; Belongs to the ammonium transporter (TC 2.A.49) family. Rh subfamily.
      
 0.758
syf2
SYF2 pre-mRNA-splicing factor.
      
 0.758
ap5s1
Adaptor related protein complex 5 subunit sigma 1.
      
 0.730
LOC100707848
CDC-like kinase 4a.
   
 
 0.699
I3JH00_ORENI
CDC-like kinase 2b; Belongs to the protein kinase superfamily.
   
 
 0.699
I3KUJ6_ORENI
CDC-like kinase 2a.
   
 
 0.699
arglu1
Arginine and glutamate rich 1a.
   
 
 0.668
zhx2
Zinc fingers and homeoboxes 2a.
      
 0.646
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.