STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tmem50aTransmembrane protein 50A. (164 aa)    
Predicted Functional Partners:
leprotl1
Leptin receptor overlapping transcript like 1.
   
 
 0.872
leprot
Leptin receptor overlapping transcript.
   
 
 0.872
chmp3
Charged multivesicular body protein 3.
    
 
 0.784
LOC100703342
Rh blood group, D antigen; Belongs to the ammonium transporter (TC 2.A.49) family. Rh subfamily.
      
 0.762
rsrp1
Uncharacterized protein.
      
 0.758
syf2
SYF2 pre-mRNA-splicing factor.
      
 0.758
znf407
Zinc finger protein 407.
      
 0.731
SPIDR
Uncharacterized protein.
      
 0.684
MYOM3
Myomesin 3.
      
 0.648
LOC100705237
Carbonic anhydrase XVI b.
      
 0.632
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.