Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100703342Rh blood group, D antigen; Belongs to the ammonium transporter (TC 2.A.49) family. Rh subfamily. (416 aa)    
Predicted Functional Partners:
Tmem50a
Transmembrane protein 50A.
      
 0.762
rsrp1
Uncharacterized protein.
      
 0.758
LOC100703311
Glutamate receptor, ionotropic, delta 1a.
      
 0.706
umodl1
Uromodulin-like 1.
      
 0.702
syf2
SYF2 pre-mRNA-splicing factor.
      
 0.676
LOC100692341
Macoilin 1a.
      
 0.630
maco1
Macoilin 1b.
      
 0.630
LOC100704359
Uncharacterized protein.
   
  
 0.595
Pir
Pirin; Belongs to the pirin family.
    
 
 0.582
dhcr24
24-dehydrocholesterol reductase.
      
 0.563
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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