Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hmgxb4HMG box domain containing 4a. (599 aa)    
Predicted Functional Partners:
mcf2
MCF.2 cell line derived transforming sequence a.
      
 0.903
lg10h17orf49
Zgc:103508.
    
 
 0.894
BPTF
Bromodomain PHD finger transcription factor.
    
   0.888
LOC100690815
Nucleosome-remodeling factor subunit BPTF isoform X2.
    
   0.888
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
    
 
 0.813
ncor2
Nuclear receptor corepressor 2.
    
   0.757
ncor1
Nuclear receptor corepressor 1.
    
   0.757
foxred2
FAD-dependent oxidoreductase domain containing 2.
      
 0.755
LOC100698445
Uncharacterized protein.
    
 
 0.735
I3KA43_ORENI
Multiple EGF-like-domains 6b.
      
 0.727
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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