STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAT1Spermidine/spermine N1-acetyltransferase 1b. (171 aa)    
Predicted Functional Partners:
LOC100695172
Spermidine/spermine N1-acetyltransferase family member 2b.
    
  0.962
odc1
Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
 0.946
srm
Exosome component 10; Belongs to the spermidine/spermine synthase family.
     
 0.933
aoc1
Amine oxidase.
     
 0.896
LOC100706625
Amine oxidase.
     
 0.869
I3KHA1_ORENI
Amine oxidase.
     
 0.869
tcf25
Transcription factor 25 (basic helix-loop-helix).
    
   0.867
SAT2
Spermidine/spermine N1-acetyltransferase family member 2.
     
  0.772
LOC100692450
N-acetyltransferase domain-containing protein.
     
  0.772
LOC100705916
Amine oxidase.
     
 0.713
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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