gcat protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

gcat

Glycine C-acetyltransferase. (425 aa)

Predicted Functional Partners:

LOC100693061

0.970

I3K213_ORENI

0.954

LOC100707770

0.952

LOC100695998

0.952

sardh

0.951

gldc

0.951

gnmt

0.950

LOC100701752

0.943

Pipox

0.940

SHMT2

0.938

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I3K213_ORENI	LOC100693061	ENSONIP00000015158	ENSONIP00000019927	Epimerase domain-containing protein.	Threonine aldolase 1.	0.949
I3K213_ORENI	gcat	ENSONIP00000015158	ENSONIP00000010367	Epimerase domain-containing protein.	Glycine C-acetyltransferase.	0.954
LOC100693061	I3K213_ORENI	ENSONIP00000019927	ENSONIP00000015158	Threonine aldolase 1.	Epimerase domain-containing protein.	0.949
LOC100693061	LOC100695998	ENSONIP00000019927	ENSONIP00000062514	Threonine aldolase 1.	Serine--pyruvate aminotransferase.	0.966
LOC100693061	LOC100701752	ENSONIP00000019927	ENSONIP00000009729	Threonine aldolase 1.	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.944
LOC100693061	LOC100707770	ENSONIP00000019927	ENSONIP00000012399	Threonine aldolase 1.	Serine--pyruvate aminotransferase.	0.952
LOC100693061	Pipox	ENSONIP00000019927	ENSONIP00000018626	Threonine aldolase 1.	Pipecolic acid oxidase.	0.950
LOC100693061	SHMT2	ENSONIP00000019927	ENSONIP00000071973	Threonine aldolase 1.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.958
LOC100693061	gcat	ENSONIP00000019927	ENSONIP00000010367	Threonine aldolase 1.	Glycine C-acetyltransferase.	0.970
LOC100693061	gldc	ENSONIP00000019927	ENSONIP00000077369	Threonine aldolase 1.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.961
LOC100693061	gnmt	ENSONIP00000019927	ENSONIP00000010400	Threonine aldolase 1.	Glycine N-methyltransferase.	0.916
LOC100693061	sardh	ENSONIP00000019927	ENSONIP00000045386	Threonine aldolase 1.	Sarcosine dehydrogenase.	0.940
LOC100695998	LOC100693061	ENSONIP00000062514	ENSONIP00000019927	Serine--pyruvate aminotransferase.	Threonine aldolase 1.	0.966
LOC100695998	LOC100701752	ENSONIP00000062514	ENSONIP00000009729	Serine--pyruvate aminotransferase.	Alanine--glyoxylate aminotransferase 2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.982
LOC100695998	LOC100707770	ENSONIP00000062514	ENSONIP00000012399	Serine--pyruvate aminotransferase.	Serine--pyruvate aminotransferase.	0.922
LOC100695998	Pipox	ENSONIP00000062514	ENSONIP00000018626	Serine--pyruvate aminotransferase.	Pipecolic acid oxidase.	0.963
LOC100695998	SHMT2	ENSONIP00000062514	ENSONIP00000071973	Serine--pyruvate aminotransferase.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.945
LOC100695998	gcat	ENSONIP00000062514	ENSONIP00000010367	Serine--pyruvate aminotransferase.	Glycine C-acetyltransferase.	0.952
LOC100695998	gldc	ENSONIP00000062514	ENSONIP00000077369	Serine--pyruvate aminotransferase.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.952
LOC100695998	gnmt	ENSONIP00000062514	ENSONIP00000010400	Serine--pyruvate aminotransferase.	Glycine N-methyltransferase.	0.949