LOC100692791 protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC100692791

ETS domain-containing protein. (256 aa)

Predicted Functional Partners:

irf8

0.653

LOC100711202

0.495

I3J1E8_ORENI

0.495

ATP6

0.488

myb

0.458

LOC100691239

0.454

Acp7

0.415

Lin7b

0.411

LOC100707874

0.410

LOC100702682

0.410

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP6	LOC100692791	ENSONIP00000079698	ENSONIP00000010446	ATP synthase subunit a.	ETS domain-containing protein.	0.488
ATP6	LOC100702682	ENSONIP00000079698	ENSONIP00000071071	ATP synthase subunit a.	Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.	0.491
ATP6	LOC100707874	ENSONIP00000079698	ENSONIP00000048441	ATP synthase subunit a.	Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.	0.491
Acp7	LOC100692791	ENSONIP00000031810	ENSONIP00000010446	Purple acid phosphatase.	ETS domain-containing protein.	0.415
Acp7	Lin7b	ENSONIP00000031810	ENSONIP00000080420	Purple acid phosphatase.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.421
I3J1E8_ORENI	LOC100692791	ENSONIP00000038031	ENSONIP00000010446	Regulatory factor X, 1a (influences HLA class II expression).	ETS domain-containing protein.	0.495
I3J1E8_ORENI	LOC100711202	ENSONIP00000038031	ENSONIP00000020526	Regulatory factor X, 1a (influences HLA class II expression).	Four and a half LIM domains 3b.	0.924
I3J1E8_ORENI	myb	ENSONIP00000038031	ENSONIP00000000598	Regulatory factor X, 1a (influences HLA class II expression).	V-myb avian myeloblastosis viral oncogene homolog.	0.581
LOC100691239	LOC100692791	ENSONIP00000006179	ENSONIP00000010446	Runt-related transcription factor.	ETS domain-containing protein.	0.454
LOC100691239	irf8	ENSONIP00000006179	ENSONIP00000007087	Runt-related transcription factor.	Interferon regulatory factor 8.	0.484
LOC100691239	myb	ENSONIP00000006179	ENSONIP00000000598	Runt-related transcription factor.	V-myb avian myeloblastosis viral oncogene homolog.	0.956
LOC100692791	ATP6	ENSONIP00000010446	ENSONIP00000079698	ETS domain-containing protein.	ATP synthase subunit a.	0.488
LOC100692791	Acp7	ENSONIP00000010446	ENSONIP00000031810	ETS domain-containing protein.	Purple acid phosphatase.	0.415
LOC100692791	I3J1E8_ORENI	ENSONIP00000010446	ENSONIP00000038031	ETS domain-containing protein.	Regulatory factor X, 1a (influences HLA class II expression).	0.495
LOC100692791	LOC100691239	ENSONIP00000010446	ENSONIP00000006179	ETS domain-containing protein.	Runt-related transcription factor.	0.454
LOC100692791	LOC100702682	ENSONIP00000010446	ENSONIP00000071071	ETS domain-containing protein.	Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.	0.410
LOC100692791	LOC100707874	ENSONIP00000010446	ENSONIP00000048441	ETS domain-containing protein.	Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.	0.410
LOC100692791	LOC100711202	ENSONIP00000010446	ENSONIP00000020526	ETS domain-containing protein.	Four and a half LIM domains 3b.	0.495
LOC100692791	Lin7b	ENSONIP00000010446	ENSONIP00000080420	ETS domain-containing protein.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.411
LOC100692791	irf8	ENSONIP00000010446	ENSONIP00000007087	ETS domain-containing protein.	Interferon regulatory factor 8.	0.653