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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
myo5cMyosin VC; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1672 aa)    
Predicted Functional Partners:
LOC100706302
RAB11a, member RAS oncogene family, like.
   
 0.732
LOC100697758
Uncharacterized protein.
   
 0.732
LOC100697224
RAB11B, member RAS oncogene family, a.
   
 0.732
RAB11A
RAB11A, member RAS oncogene family.
   
 0.732
RAB11B
Ras-related protein Rab-11B.
   
 0.732
rsl24d1
Ribosomal L24 domain containing 1.
      
 0.697
exoc4
Exocyst complex component 4.
    
 0.685
ENSONIP00000032100
Calmodulin 2a (phosphorylase kinase, delta).
    
 0.635
ENSONIP00000045107
annotation not available
    
 0.635
ENSONIP00000050053
annotation not available
    
 0.635
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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