LOC100704748 protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100704748

Uncharacterized protein. (1429 aa)

Predicted Functional Partners:

Cntn2

0.491

cntn5

0.457

cntn1

0.457

LOC100703160

0.457

LOC100696343

0.457

LOC100695819

0.457

LOC100695551

0.457

CNTN1

0.457

LOC100702624

0.457

aasdhppt

0.453

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNTN1	LOC100704748	ENSONIP00000069127	ENSONIP00000010463	Contactin 1.	Uncharacterized protein.	0.457
CNTN1	cntn1	ENSONIP00000069127	ENSONIP00000035488	Contactin 1.	Contactin 1b.	0.902
Cntn2	LOC100704748	ENSONIP00000006395	ENSONIP00000010463	Contactin 2.	Uncharacterized protein.	0.491
LOC100695551	LOC100704748	ENSONIP00000067633	ENSONIP00000010463	Contactin 4.	Uncharacterized protein.	0.457
LOC100695819	LOC100704748	ENSONIP00000059476	ENSONIP00000010463	Uncharacterized protein.	Uncharacterized protein.	0.457
LOC100696343	LOC100704748	ENSONIP00000047474	ENSONIP00000010463	Contactin 3b.	Uncharacterized protein.	0.457
LOC100702624	LOC100704748	ENSONIP00000072752	ENSONIP00000010463	Contactin 3a, tandem duplicate 1.	Uncharacterized protein.	0.457
LOC100703160	LOC100704748	ENSONIP00000037279	ENSONIP00000010463	Contactin 3a, tandem duplicate 2.	Uncharacterized protein.	0.457
LOC100704748	CNTN1	ENSONIP00000010463	ENSONIP00000069127	Uncharacterized protein.	Contactin 1.	0.457
LOC100704748	Cntn2	ENSONIP00000010463	ENSONIP00000006395	Uncharacterized protein.	Contactin 2.	0.491
LOC100704748	LOC100695551	ENSONIP00000010463	ENSONIP00000067633	Uncharacterized protein.	Contactin 4.	0.457
LOC100704748	LOC100695819	ENSONIP00000010463	ENSONIP00000059476	Uncharacterized protein.	Uncharacterized protein.	0.457
LOC100704748	LOC100696343	ENSONIP00000010463	ENSONIP00000047474	Uncharacterized protein.	Contactin 3b.	0.457
LOC100704748	LOC100702624	ENSONIP00000010463	ENSONIP00000072752	Uncharacterized protein.	Contactin 3a, tandem duplicate 1.	0.457
LOC100704748	LOC100703160	ENSONIP00000010463	ENSONIP00000037279	Uncharacterized protein.	Contactin 3a, tandem duplicate 2.	0.457
LOC100704748	aasdhppt	ENSONIP00000010463	ENSONIP00000006385	Uncharacterized protein.	Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase.	0.453
LOC100704748	cntn1	ENSONIP00000010463	ENSONIP00000035488	Uncharacterized protein.	Contactin 1b.	0.457
LOC100704748	cntn5	ENSONIP00000010463	ENSONIP00000007231	Uncharacterized protein.	Contactin 5.	0.457
aasdhppt	LOC100704748	ENSONIP00000006385	ENSONIP00000010463	Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase.	Uncharacterized protein.	0.453
cntn1	CNTN1	ENSONIP00000035488	ENSONIP00000069127	Contactin 1b.	Contactin 1.	0.902