Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Phf12PHD finger protein 12b. (711 aa)    
Predicted Functional Partners:
gatad1
GATA zinc finger domain containing 1.
    
 
 0.858
sin3a
SIN3 transcription regulator family member Aa.
   
 0.856
sin3b
SIN3 transcription regulator family member B.
   
 0.856
LOC100694434
SIN3 transcription regulator family member Ab.
   
 0.856
emsy
EMSY transcriptional repressor, BRCA2 interacting.
   
 
 0.831
I3JV04_ORENI
Translocase of outer mitochondrial membrane 20.
    
 
 0.826
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 
 0.826
setd2
SET domain containing 2, histone lysine methyltransferase.
   
 
 0.732
btaf1
BTAF1 RNA polymerase II, B-TFIID transcription factor-associated.
   
 
 0.723
LOC100691845
MRG domain-containing protein.
    
 
 0.705
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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