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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100694676Protogenin homolog b (Gallus gallus). (1143 aa)    
Predicted Functional Partners:
rsl24d1
Ribosomal L24 domain containing 1.
 
    
 0.616
capsl
Calcyphosine-like b.
      
 0.613
atp8b2
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
      
 0.609
LOC100704305
Myosin VAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
     
 0.598
LOC100701936
Methyl-CpG binding domain protein 3b; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
     
 0.598
myo5c
Myosin VC; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
     
 0.598
LOC100694407
Myosin VAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
     
 0.598
il7r
Fibronectin type-III domain-containing protein.
     
 0.530
I3JMB1_ORENI
Angiomotin.
    
 0.450
LOC100692989
Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.
    
 
 0.409
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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