nol12 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

nol12

Nucleolar protein 12. (232 aa)

Predicted Functional Partners:

rpf2

0.973

LOC100711132

0.971

Brix1

0.970

ebna1bp2

0.960

noc3l

0.942

ftsj3

0.941

ddx27

0.941

rrp8

0.939

gnl3

0.938

nop53

0.937

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Brix1	LOC100711132	ENSONIP00000009737	ENSONIP00000027780	Brix domain containing 2.	Nucleolar protein interacting with the FHA domain of MKI67.	0.993
Brix1	ddx27	ENSONIP00000009737	ENSONIP00000024514	Brix domain containing 2.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.	0.934
Brix1	ebna1bp2	ENSONIP00000009737	ENSONIP00000068299	Brix domain containing 2.	EBNA1 binding protein 2.	0.998
Brix1	ftsj3	ENSONIP00000009737	ENSONIP00000002074	Brix domain containing 2.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.982
Brix1	gnl3	ENSONIP00000009737	ENSONIP00000024337	Brix domain containing 2.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.961
Brix1	noc3l	ENSONIP00000009737	ENSONIP00000080815	Brix domain containing 2.	Nucleolar complex protein 3 homolog.	0.991
Brix1	nol12	ENSONIP00000009737	ENSONIP00000010526	Brix domain containing 2.	Nucleolar protein 12.	0.970
Brix1	nop53	ENSONIP00000009737	ENSONIP00000020940	Brix domain containing 2.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.954
Brix1	rpf2	ENSONIP00000009737	ENSONIP00000053094	Brix domain containing 2.	Ribosome production factor 2 homolog.	0.995
Brix1	rrp8	ENSONIP00000009737	ENSONIP00000021250	Brix domain containing 2.	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.	0.961
LOC100711132	Brix1	ENSONIP00000027780	ENSONIP00000009737	Nucleolar protein interacting with the FHA domain of MKI67.	Brix domain containing 2.	0.993
LOC100711132	ddx27	ENSONIP00000027780	ENSONIP00000024514	Nucleolar protein interacting with the FHA domain of MKI67.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.	0.991
LOC100711132	ebna1bp2	ENSONIP00000027780	ENSONIP00000068299	Nucleolar protein interacting with the FHA domain of MKI67.	EBNA1 binding protein 2.	0.994
LOC100711132	ftsj3	ENSONIP00000027780	ENSONIP00000002074	Nucleolar protein interacting with the FHA domain of MKI67.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.984
LOC100711132	gnl3	ENSONIP00000027780	ENSONIP00000024337	Nucleolar protein interacting with the FHA domain of MKI67.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.979
LOC100711132	noc3l	ENSONIP00000027780	ENSONIP00000080815	Nucleolar protein interacting with the FHA domain of MKI67.	Nucleolar complex protein 3 homolog.	0.990
LOC100711132	nol12	ENSONIP00000027780	ENSONIP00000010526	Nucleolar protein interacting with the FHA domain of MKI67.	Nucleolar protein 12.	0.971
LOC100711132	nop53	ENSONIP00000027780	ENSONIP00000020940	Nucleolar protein interacting with the FHA domain of MKI67.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.990
LOC100711132	rpf2	ENSONIP00000027780	ENSONIP00000053094	Nucleolar protein interacting with the FHA domain of MKI67.	Ribosome production factor 2 homolog.	0.996
LOC100711132	rrp8	ENSONIP00000027780	ENSONIP00000021250	Nucleolar protein interacting with the FHA domain of MKI67.	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.	0.949