Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdlim4PDZ and LIM domain protein 1/2/3/4. (364 aa)    
Predicted Functional Partners:
LOC100702294
PDZ and LIM domain 2 (mystique).
  
  
0.975
Pdlim1
PDZ and LIM domain 1 (elfin).
     
 
0.956
pdlim3
PDZ and LIM domain 3a.
     
 
0.921
trip6
Uncharacterized protein.
   
 
 0.685
LOC100694679
LIM domain containing preferred translocation partner in lipoma.
   
 
 0.685
LOC100707522
LIM domain binding 3b.
     
 
0.666
ptpn13
Protein tyrosine phosphatase non-receptor type 13.
    
 0.636
I3KUQ7_ORENI
FERM and PDZ domain containing 2.
    
 0.636
ENSONIP00000076478
annotation not available
    
 0.636
LOC100710946
Folate receptor.
      
 0.625
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.