STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100706610Uncharacterized protein. (1097 aa)    
Predicted Functional Partners:
thap4
THAP domain containing 4.
      
 0.581
zar1l
Zygote arrest 1-like.
      
 0.573
LOC100695509
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 0.563
LOC100697359
Uncharacterized protein.
    
 0.563
Rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
    
 0.563
dtymk
Deoxythymidylate kinase (thymidylate kinase).
      
 0.481
pax9
Paired box 9.
      
 0.470
LOC100698634
Forkhead box N1.
      
 0.454
eif1ad
Eukaryotic translation initiation factor 1A domain containing.
      
 0.451
I3KZL7_ORENI
Zinc finger and BTB domain containing 1.
    
 
 0.436
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.