Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC100695025CTD small phosphatase like 2. (474 aa)    
Predicted Functional Partners:
gtf2f1
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.615
I3J4W3_ORENI
Serine/threonine kinase 35, like; Belongs to the protein kinase superfamily.
   
 
 0.588
LOC100707119
Serine/threonine kinase 35; Belongs to the protein kinase superfamily.
   
 
 0.588
pdik1l
PDLIM1 interacting kinase 1 like; Belongs to the protein kinase superfamily.
   
 
 0.588
polr2g
Polymerase (RNA) II (DNA directed) polypeptide G-like.
    
 0.582
Cnep1r1
CTD nuclear envelope phosphatase 1 regulatory subunit 1.
   
 0.579
polr2d
Polymerase (RNA) II (DNA directed) polypeptide D.
    
 0.576
polr2j
Polymerase (RNA) II (DNA directed) polypeptide J.
    
 0.557
lpin1
Si:ch73-21k16.1.
    
 0.553
LOC100711622
Lipin 2.
    
 0.553
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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