LOC100695912 protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100695912

Cold shock domain containing C2. (155 aa)

Predicted Functional Partners:

polr2f

0.598

snrpd3

0.587

snrpe

0.571

Snrpf

0.566

polr2b

0.561

Snrpg

0.558

snrnp35

0.552

polr2c

0.540

hnrnpk

0.519

LOC100706673

0.519

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100695912	LOC100706673	ENSONIP00000010612	ENSONIP00000047018	Cold shock domain containing C2.	Heterogeneous nuclear ribonucleoprotein K, like.	0.519
LOC100695912	Snrpf	ENSONIP00000010612	ENSONIP00000068044	Cold shock domain containing C2.	Small nuclear ribonucleoprotein F.	0.566
LOC100695912	Snrpg	ENSONIP00000010612	ENSONIP00000064463	Cold shock domain containing C2.	Small nuclear ribonucleoprotein G.	0.558
LOC100695912	hnrnpk	ENSONIP00000010612	ENSONIP00000018888	Cold shock domain containing C2.	Heterogeneous nuclear ribonucleoprotein K.	0.519
LOC100695912	polr2b	ENSONIP00000010612	ENSONIP00000000084	Cold shock domain containing C2.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.561
LOC100695912	polr2c	ENSONIP00000010612	ENSONIP00000030110	Cold shock domain containing C2.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.540
LOC100695912	polr2f	ENSONIP00000010612	ENSONIP00000064123	Cold shock domain containing C2.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.598
LOC100695912	snrnp35	ENSONIP00000010612	ENSONIP00000026663	Cold shock domain containing C2.	Small nuclear ribonucleoprotein 35 (U11/U12).	0.552
LOC100695912	snrpd3	ENSONIP00000010612	ENSONIP00000004821	Cold shock domain containing C2.	Small nuclear ribonucleoprotein Sm D3.	0.587
LOC100695912	snrpe	ENSONIP00000010612	ENSONIP00000072391	Cold shock domain containing C2.	Small nuclear ribonucleoprotein E.	0.571
LOC100706673	LOC100695912	ENSONIP00000047018	ENSONIP00000010612	Heterogeneous nuclear ribonucleoprotein K, like.	Cold shock domain containing C2.	0.519
LOC100706673	Snrpf	ENSONIP00000047018	ENSONIP00000068044	Heterogeneous nuclear ribonucleoprotein K, like.	Small nuclear ribonucleoprotein F.	0.429
LOC100706673	hnrnpk	ENSONIP00000047018	ENSONIP00000018888	Heterogeneous nuclear ribonucleoprotein K, like.	Heterogeneous nuclear ribonucleoprotein K.	0.901
LOC100706673	polr2b	ENSONIP00000047018	ENSONIP00000000084	Heterogeneous nuclear ribonucleoprotein K, like.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.662
LOC100706673	polr2c	ENSONIP00000047018	ENSONIP00000030110	Heterogeneous nuclear ribonucleoprotein K, like.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.578
LOC100706673	polr2f	ENSONIP00000047018	ENSONIP00000064123	Heterogeneous nuclear ribonucleoprotein K, like.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.553
LOC100706673	snrnp35	ENSONIP00000047018	ENSONIP00000026663	Heterogeneous nuclear ribonucleoprotein K, like.	Small nuclear ribonucleoprotein 35 (U11/U12).	0.534
LOC100706673	snrpd3	ENSONIP00000047018	ENSONIP00000004821	Heterogeneous nuclear ribonucleoprotein K, like.	Small nuclear ribonucleoprotein Sm D3.	0.413
Snrpf	LOC100695912	ENSONIP00000068044	ENSONIP00000010612	Small nuclear ribonucleoprotein F.	Cold shock domain containing C2.	0.566
Snrpf	LOC100706673	ENSONIP00000068044	ENSONIP00000047018	Small nuclear ribonucleoprotein F.	Heterogeneous nuclear ribonucleoprotein K, like.	0.429