Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100695912Cold shock domain containing C2. (155 aa)    
Predicted Functional Partners:
ppp2r1b
Protein phosphatase 2, regulatory subunit A, beta b.
    
   0.762
Snrpf
Small nuclear ribonucleoprotein F.
   
  0.629
Snrpg
Small nuclear ribonucleoprotein G.
   
  0.607
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
  0.575
aknad1
AT-hook-containing transcription factor.
   
  
 0.573
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.537
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
 0.531
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
  0.526
rps27a
Ribosomal protein S27a.
   
  0.522
rps15
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.518
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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