STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100699914Smith-Magenis syndrome chromosome region, candidate 8a. (937 aa)    
Predicted Functional Partners:
Lg19h9orf72
Zgc:100846.
    
 0.984
wdr41
WD repeat domain 41.
    
 0.977
RAB39B
RAB39B, member RAS oncogene family.
    
 0.934
tbk1
TANK-binding kinase 1.
   
 0.924
ulk1
Unc-51 like autophagy activating kinase 1.
    
 0.921
LOC100699294
Unc-51 like autophagy activating kinase 1a.
    
 0.921
ulk2
Unc-51 like autophagy activating kinase 2.
    
 0.920
LOC100703352
RAB8A, member RAS oncogene family.
    
 0.914
rab8a
RAB8A, member RAS oncogene family.
    
 0.914
LOC100704346
TRAF family member-associated NF-kappa-B activator isoform X2.
     
 0.911
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.