Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC100699914Smith-Magenis syndrome chromosome region, candidate 8a. (937 aa)    
Predicted Functional Partners:
Lg19h9orf72
Zgc:100846.
    
 0.997
wdr41
WD repeat domain 41.
    
 0.993
LOC102078765
Smith-Magenis syndrome chromosome region, candidate 8b.
  
  
 
0.962
RAB39B
RAB39B, member RAS oncogene family.
    
 0.961
tbk1
TANK-binding kinase 1.
   
 0.951
ulk2
Unc-51 like autophagy activating kinase 2.
    
 0.948
ulk1
Unc-51 like autophagy activating kinase 1.
    
 0.928
LOC100699294
Unc-51 like autophagy activating kinase 1a.
    
 0.928
LOC100704346
TRAF family member-associated NF-kappa-B activator isoform X2.
     
 0.926
rab39b
Uncharacterized protein.
    
 0.920
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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