STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm27RNA binding motif protein 27. (1052 aa)    
Predicted Functional Partners:
ZFC3H1
Zinc finger C3H1-type containing.
   
 
 0.724
mtrex
Mtr4 exosome RNA helicase.
   
 
 0.558
Pabpn1
Poly(A) binding protein, nuclear 1.
    
 
 0.524
PABPN1L
Embryonic polyadenylate-binding protein 2 isoform X2.
    
 
 0.524
ENSONIP00000050617
Polyadenylate-binding protein 2-B-like.
    
 
 0.524
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
   
 
 0.463
LOC100693928
RRM domain-containing protein.
    
 
 0.435
LOC100698415
RNA-binding protein with serine-rich domain 1.
    
 
 0.435
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.