Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rbm27RNA binding motif protein 27. (1052 aa)    
Predicted Functional Partners:
ZFC3H1
Zinc finger C3H1-type containing.
   
 0.904
mtrex
Mtr4 exosome RNA helicase.
   
 0.846
Pabpn1
Poly(A) binding protein, nuclear 1.
    
 0.780
PABPN1L
Embryonic polyadenylate-binding protein 2 isoform X2.
    
 0.780
ENSONIP00000050617
Polyadenylate-binding protein 2-B-like.
    
 0.780
LOC100704180
Poly(A) polymerase gamma.
   
 
 0.756
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.739
YTHDC2
YTH domain containing 2.
   
 
 0.724
zc3h3
Zinc finger CCCH domain-containing protein 3 isoform X4.
   
 
 0.723
LOC100693928
RRM domain-containing protein.
    
 0.702
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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