STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPEB4Cytoplasmic polyadenylation element binding protein 4. (777 aa)    
Predicted Functional Partners:
LOC100694808
Aurora kinase A; Belongs to the protein kinase superfamily.
   
 0.912
cdk1
Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.
    
 0.905
LOC100692470
Cyclin B2; Belongs to the cyclin family.
   
 
 0.904
Kdm1a
Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.
      
 0.525
LOC100699171
Epithelial splicing regulatory protein 2.
      
 0.525
LOC100708356
RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events.
   
  
 0.521
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.502
apbb2
Amyloid beta (A4) precursor protein-binding, family B, member 2b.
      
 0.487
p2ry6
Pyrimidinergic receptor P2Y6.
      
 0.485
apbb3
Amyloid beta (A4) precursor protein-binding, family B, member 3.
      
 0.483
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.