Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100693791Four and a half LIM domains 1b. (279 aa)    
Predicted Functional Partners:
fhl3
Four and a half LIM domains 3a.
    
  0.818
fhl1
Four and a half LIM domains 1a.
     
  0.812
LOC106098755
Recombination signal binding protein for immunoglobulin kappa J region a.
    
 
 0.731
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 
 0.731
LOC100704348
Signal transducer and activator of transcription.
    
  0.607
LOC100690945
Signal transducer and activator of transcription.
    
  0.607
LOC100692331
Signal transducer and activator of transcription.
    
  0.607
stat1
Signal transducer and activator of transcription.
    
  0.571
stat3
Signal transducer and activator of transcription.
    
  0.571
stat4
Signal transducer and activator of transcription.
    
  0.571
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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