Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSONIP00000010744Ras-related protein Rab-39A. (218 aa)    
Predicted Functional Partners:
RAB39B
RAB39B, member RAS oncogene family.
   
  0.913
wdr41
WD repeat domain 41.
    
  0.912
Lg19h9orf72
Zgc:100846.
    
  0.910
sqstm1
Sequestosome 1.
     
  0.909
rab39b
Uncharacterized protein.
   
  0.901
LOC102078765
Smith-Magenis syndrome chromosome region, candidate 8b.
    
  0.853
LOC100699914
Smith-Magenis syndrome chromosome region, candidate 8a.
    
  0.853
LOC100690604
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.736
ENSONIP00000000682
Intersectin 2a.
    
 0.607
I3KKD0_ORENI
Intersectin 2b.
    
 0.607
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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