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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100704335Uncharacterized protein. (655 aa)    
Predicted Functional Partners:
neo1
Neogenin 1b.
   
 0.648
Dcc
DCC netrin 1 receptor.
   
 0.648
LOC100705111
Immunoglobulin superfamily, DCC subclass, member 4.
   
 0.577
unc5c
Unc-5 netrin receptor C.
     
 0.576
LOC100698253
Unc-5 netrin receptor C.
     
 0.576
LOC100706931
Unc-5 netrin receptor Db.
     
 0.538
LOC100697801
Unc-5 netrin receptor Da.
     
 0.538
ikbke
Inhibitor of nuclear factor kappa B kinase subunit epsilon.
   
 0.436
tbk1
TANK-binding kinase 1.
   
 0.436
unc5b
Unc-5 netrin receptor B.
      
 0.430
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.