STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100705141Upper zone of growth plate and cartilage matrix associated b. (134 aa)    
Predicted Functional Partners:
disc1
DISC1 scaffold protein.
      
 0.701
ccdc78
Coiled-coil domain containing 78.
      
 0.700
I3KXA9_ORENI
Fin bud initiation factor b.
      
 0.591
ush1c
USH1 protein network component harmonin.
      
 0.586
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.547
LOC100534464
Homeobox C5a.
      
 0.487
ttc21b
Tetratricopeptide repeat domain 21B.
      
 0.487
lepa
Leptin A.
      
 0.480
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
      
 0.480
znf536
Zinc finger protein 536.
     
 0.477
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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