STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100696985HIV-1 Tat specific factor 1. (452 aa)    
Predicted Functional Partners:
sf3b1
Splicing factor 3b, subunit 1.
    
 
 0.984
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.959
sf3b2
Splicing factor 3b, subunit 2.
   
 
 0.942
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 
 0.942
sf3a2
Splicing factor 3a, subunit 2.
   
 
 0.913
Snrpa1
Small nuclear ribonucleoprotein polypeptide A.
    
 
 0.908
ENSONIP00000052157
annotation not available
   
 
 0.890
sf3a1
Splicing factor 3a, subunit 1.
    
 
 0.882
sf3b3
Splicing factor 3b, subunit 3.
    
 
 0.882
phf5a
PHD finger protein 5A.
    
 
 0.871
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.