Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC100696985HIV-1 Tat specific factor 1. (452 aa)    
Predicted Functional Partners:
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
     
 0.987
sf3b1
Splicing factor 3b, subunit 1.
    
 0.987
sf3a2
Splicing factor 3a, subunit 2.
   
 0.983
Snrpa1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.978
SUGP1
SURP and G-patch domain containing 1.
     
 0.963
dnajc8
DnaJ (Hsp40) homolog, subfamily C, member 8.
     
 0.962
prpf40a
PRP40 pre-mRNA processing factor 40 homolog A.
   
 
 0.957
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.934
luc7l3
LUC7-like 3 pre-mRNA splicing factor.
   
 
 0.922
TCERG1
Transcription elongation regulator 1.
   
 
 0.913
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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