STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sox30HMG box domain-containing protein. (353 aa)    
Predicted Functional Partners:
LOC100534555
Doublesex and mab-3 related transcription factor 1.
    
 0.769
thg1l
tRNA(His) guanylyltransferase; Adds a GMP to the 5'-end of tRNA(His) after transcription and RNase P cleavage.
      
 0.709
LOC100695295
Polypeptide N-acetylgalactosaminyltransferase.
      
 0.578
TSSK2
Testis specific serine kinase 2; Belongs to the protein kinase superfamily.
      
 0.573
LOC100691239
Runt-related transcription factor.
   
 0.529
runx3
Runt-related transcription factor.
   
 0.529
runx2
Runt-related transcription factor.
   
 0.529
egr2
Early growth response 2b.
    
 0.527
I3IYW8_ORENI
Runt domain-containing protein.
   
 0.511
LOC100706011
POU domain protein.
    
 0.509
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.