Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sox30HMG box domain-containing protein. (353 aa)    
Predicted Functional Partners:
LOC100534555
Doublesex and mab-3 related transcription factor 1.
    
 0.836
TSSK2
Testis specific serine kinase 2; Belongs to the protein kinase superfamily.
      
 0.701
thg1l
tRNA(His) guanylyltransferase; Adds a GMP to the 5'-end of tRNA(His) after transcription and RNase P cleavage.
      
 0.680
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.668
spo11
SPO11 initiator of meiotic double stranded breaks.
      
 0.633
LOC100695295
Polypeptide N-acetylgalactosaminyltransferase.
      
 0.616
LOC100691239
Runt-related transcription factor.
   
 0.578
mybl1
V-myb avian myeloblastosis viral oncogene homolog-like 1.
     
 0.578
runx3
Runt-related transcription factor.
   
 0.578
runx2
Runt-related transcription factor.
   
 0.578
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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