Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GXYLT1Glucoside xylosyltransferase 1. (447 aa)    
Predicted Functional Partners:
LOC100708367
Glucoside xylosyltransferase 1b.
     
  0.916
gxylt2
Glucoside xylosyltransferase 2.
     
  0.916
poglut2
Protein O-glucosyltransferase 2.
      
 0.625
pgk1
Phosphoglycerate kinase.
      
 0.606
LOC100694582
Nuclear protein, ataxia-telangiectasia locus.
    
 
 0.559
zcrb1
Zinc finger CCHC-type and RNA binding motif 1.
      
 0.538
disp1
Dispatched homolog 1 (Drosophila).
      
 0.526
tmem117
Transmembrane protein 117.
      
 0.524
armc9
Armadillo repeat containing 9.
     
 0.502
POGLUT1
Protein O-glucosyltransferase 1.
      
 0.492
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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