Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
usp48Ubiquitin specific peptidase 48; Belongs to the peptidase C19 family. (1050 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.941
nup188
Nucleoporin 188.
    
   0.923
I3JX38_ORENI
UBA domain containing 1.
    
   0.873
traf2
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.843
I3JW29_ORENI
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.843
LOC100708442
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.843
I3IUU1_ORENI
Ring finger protein 123.
    
   0.781
gps1
G protein pathway suppressor 1.
    
   0.758
usp30
Ubiquitin carboxyl-terminal hydrolase.
    
 
 0.745
ENSONIP00000047919
Ubiquitin B.
   
 0.727
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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