zbtb40 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

zbtb40

Zinc finger and BTB domain containing 40. (850 aa)

Predicted Functional Partners:

SRBD1

0.750

Zzz3

0.676

wrap73

0.659

fbxw4

0.644

terb2

0.635

LOC100700908

0.629

cyp17a2

0.610

cyp17

0.610

LOC100710383

0.601

LOC100709052

0.601

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100700908	zbtb40	ENSONIP00000004125	ENSONIP00000010956	Lymphocyte antigen 75.	Zinc finger and BTB domain containing 40.	0.629
LOC100709052	LOC100710383	ENSONIP00000080347	ENSONIP00000002838	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	0.546
LOC100709052	zbtb40	ENSONIP00000080347	ENSONIP00000010956	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	Zinc finger and BTB domain containing 40.	0.601
LOC100710383	LOC100709052	ENSONIP00000002838	ENSONIP00000080347	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	0.546
LOC100710383	zbtb40	ENSONIP00000002838	ENSONIP00000010956	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Zinc finger and BTB domain containing 40.	0.601
SRBD1	fbxw4	ENSONIP00000071238	ENSONIP00000016578	S1 RNA binding domain 1.	F-box and WD repeat domain containing 4.	0.729
SRBD1	zbtb40	ENSONIP00000071238	ENSONIP00000010956	S1 RNA binding domain 1.	Zinc finger and BTB domain containing 40.	0.750
Zzz3	fbxw4	ENSONIP00000045891	ENSONIP00000016578	Zinc finger, ZZ-type containing 3.	F-box and WD repeat domain containing 4.	0.440
Zzz3	zbtb40	ENSONIP00000045891	ENSONIP00000010956	Zinc finger, ZZ-type containing 3.	Zinc finger and BTB domain containing 40.	0.676
cyp17	zbtb40	ENSONIP00000049882	ENSONIP00000010956	Cytochrome P450, family 17, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.	Zinc finger and BTB domain containing 40.	0.610
cyp17a2	zbtb40	ENSONIP00000043854	ENSONIP00000010956	Cytochrome P450, family 17, subfamily A, polypeptide 2; Belongs to the cytochrome P450 family.	Zinc finger and BTB domain containing 40.	0.610
fbxw4	SRBD1	ENSONIP00000016578	ENSONIP00000071238	F-box and WD repeat domain containing 4.	S1 RNA binding domain 1.	0.729
fbxw4	Zzz3	ENSONIP00000016578	ENSONIP00000045891	F-box and WD repeat domain containing 4.	Zinc finger, ZZ-type containing 3.	0.440
fbxw4	zbtb40	ENSONIP00000016578	ENSONIP00000010956	F-box and WD repeat domain containing 4.	Zinc finger and BTB domain containing 40.	0.644
terb2	zbtb40	ENSONIP00000007835	ENSONIP00000010956	Telomere repeat binding bouquet formation protein 2.	Zinc finger and BTB domain containing 40.	0.635
wrap73	zbtb40	ENSONIP00000068198	ENSONIP00000010956	WD repeat containing, antisense to TP73.	Zinc finger and BTB domain containing 40.	0.659
zbtb40	LOC100700908	ENSONIP00000010956	ENSONIP00000004125	Zinc finger and BTB domain containing 40.	Lymphocyte antigen 75.	0.629
zbtb40	LOC100709052	ENSONIP00000010956	ENSONIP00000080347	Zinc finger and BTB domain containing 40.	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	0.601
zbtb40	LOC100710383	ENSONIP00000010956	ENSONIP00000002838	Zinc finger and BTB domain containing 40.	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	0.601
zbtb40	SRBD1	ENSONIP00000010956	ENSONIP00000071238	Zinc finger and BTB domain containing 40.	S1 RNA binding domain 1.	0.750