Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nell2Neural EGFL like 2a. (813 aa)    
Predicted Functional Partners:
lg3h4orf48
Si:dkeyp-75h12.5.
   
 
 0.779
robo3
Roundabout, axon guidance receptor, homolog 3 (Drosophila).
    
 0.726
Ndufaf6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
      
 0.655
SYNDIG1
Synapse differentiation inducing 1.
   
  
 0.654
LOC100703880
F-box and WD repeat domain containing 11a.
    
 0.611
dbr1
Debranching RNA lariats 1.
    
 
 0.607
ubqln4
Ubiquilin 4.
    
 0.573
NRXN2
Neurexin 2.
   
  
 0.557
Uhmk1
U2AF homology motif (UHM) kinase 1.
    
 0.539
LOC100707347
Stathmin; Belongs to the stathmin family.
   
 0.539
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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