Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100712095Uncharacterized protein. (362 aa)    
Predicted Functional Partners:
fh
Fumarate hydratase.
    
 0.825
cs
Citrate synthase; Belongs to the citrate synthase family.
   
 
 0.815
xylb
Xylulokinase homolog (H. influenzae).
    
 0.795
LOC100711605
Malate synthase-like.
    
 0.787
oat
Ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.775
aadat
Aminoadipate aminotransferase.
   
 
  0.759
Crym
Crystallin, mu.
     
 0.676
LOC100705311
Aspartate aminotransferase.
     
 0.665
LOC100697026
Si:ch211-198n5.11.
  
 
  0.651
pccb
Propionyl-CoA carboxylase subunit beta.
  
 
  0.651
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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