Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC112847533Pulmonary surfactant-associated protein D-like. (239 aa)    
Predicted Functional Partners:
serping1
Serpin peptidase inhibitor, clade G (C1 inhibitor), member 1; Belongs to the serpin family.
     
 0.700
LOC100707990
Uncharacterized protein; Belongs to the peptidase S1 family.
   
 
 0.566
LOC100697699
Si:ch1073-280e3.1; Belongs to the peptidase S1 family.
   
 
 0.566
cfi
Uncharacterized protein; Belongs to the peptidase S1 family.
   
 
 0.558
LOC100711081
Collectin sub-family member 12.
    
 0.531
masp2
Mannan-binding lectin serine peptidase 2.
     
  0.472
I3K9D2_ORENI
Fibrinogen alpha chain.
   
 0.451
LOC100706759
Complement component 1, r subcomponent; Belongs to the peptidase S1 family.
   
 0.413
I3KKW9_ORENI
Mannan-binding lectin serine peptidase 1; Belongs to the peptidase S1 family.
   
 0.413
LOC100711586
Complement component 1, s subcomponent.
   
 0.413
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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