creg1 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

creg1

Uncharacterized protein. (644 aa)

Predicted Functional Partners:

suv39h1

0.939

I3KNJ8_ORENI

0.939

atf7ip2

0.939

camkmt

0.930

I3IU26_ORENI

0.879

smyd3

0.878

setd2

0.854

LOC100698471

0.849

mphosph8

0.847

arl14ep

0.844

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I3IU26_ORENI	LOC100698471	ENSONIP00000000116	ENSONIP00000025548	Lysine (K)-specific methyltransferase 2E.	SET domain and mariner transposase fusion gene.	0.921
I3IU26_ORENI	camkmt	ENSONIP00000000116	ENSONIP00000078126	Lysine (K)-specific methyltransferase 2E.	Calmodulin-lysine N-methyltransferase.	0.923
I3IU26_ORENI	creg1	ENSONIP00000000116	ENSONIP00000011317	Lysine (K)-specific methyltransferase 2E.	Uncharacterized protein.	0.879
I3IU26_ORENI	setd2	ENSONIP00000000116	ENSONIP00000003855	Lysine (K)-specific methyltransferase 2E.	SET domain containing 2, histone lysine methyltransferase.	0.987
I3IU26_ORENI	smyd3	ENSONIP00000000116	ENSONIP00000021606	Lysine (K)-specific methyltransferase 2E.	SET and MYND domain containing 3.	0.951
I3IU26_ORENI	suv39h1	ENSONIP00000000116	ENSONIP00000014663	Lysine (K)-specific methyltransferase 2E.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.946
I3KNJ8_ORENI	arl14ep	ENSONIP00000022693	ENSONIP00000051163	Activating transcription factor 7 interacting protein.	ADP-ribosylation factor-like 14 effector protein.	0.957
I3KNJ8_ORENI	creg1	ENSONIP00000022693	ENSONIP00000011317	Activating transcription factor 7 interacting protein.	Uncharacterized protein.	0.939
I3KNJ8_ORENI	suv39h1	ENSONIP00000022693	ENSONIP00000014663	Activating transcription factor 7 interacting protein.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.515
LOC100698471	I3IU26_ORENI	ENSONIP00000025548	ENSONIP00000000116	SET domain and mariner transposase fusion gene.	Lysine (K)-specific methyltransferase 2E.	0.921
LOC100698471	camkmt	ENSONIP00000025548	ENSONIP00000078126	SET domain and mariner transposase fusion gene.	Calmodulin-lysine N-methyltransferase.	0.921
LOC100698471	creg1	ENSONIP00000025548	ENSONIP00000011317	SET domain and mariner transposase fusion gene.	Uncharacterized protein.	0.849
LOC100698471	mphosph8	ENSONIP00000025548	ENSONIP00000019804	SET domain and mariner transposase fusion gene.	M-phase phosphoprotein 8.	0.421
LOC100698471	setd2	ENSONIP00000025548	ENSONIP00000003855	SET domain and mariner transposase fusion gene.	SET domain containing 2, histone lysine methyltransferase.	0.868
LOC100698471	smyd3	ENSONIP00000025548	ENSONIP00000021606	SET domain and mariner transposase fusion gene.	SET and MYND domain containing 3.	0.760
LOC100698471	suv39h1	ENSONIP00000025548	ENSONIP00000014663	SET domain and mariner transposase fusion gene.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.855
arl14ep	I3KNJ8_ORENI	ENSONIP00000051163	ENSONIP00000022693	ADP-ribosylation factor-like 14 effector protein.	Activating transcription factor 7 interacting protein.	0.957
arl14ep	atf7ip2	ENSONIP00000051163	ENSONIP00000058922	ADP-ribosylation factor-like 14 effector protein.	Activating transcription factor 7-interacting protein 2 isoform X1.	0.957
arl14ep	creg1	ENSONIP00000051163	ENSONIP00000011317	ADP-ribosylation factor-like 14 effector protein.	Uncharacterized protein.	0.844
arl14ep	suv39h1	ENSONIP00000051163	ENSONIP00000014663	ADP-ribosylation factor-like 14 effector protein.	Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.	0.543