Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102079525ZFP91-CNTF readthrough (NMD candidate). (776 aa)    
Predicted Functional Partners:
crbn
Cereblon.
    
 
 0.919
LOC100693633
PYD and CARD domain containing.
    
  0.583
znf598
Zinc finger protein 598.
      
 0.560
zc3h13
Zinc finger CCCH-type containing 13.
    
   0.549
sephs1
Selenophosphate synthetase 1.
    
   0.548
ddb1
Damage-specific DNA binding protein 1.
    
 0.548
I3IVN0_ORENI
Selenophosphate synthetase 2.
    
   0.548
pak1ip1
PAK1 interacting protein 1.
      
 0.536
Rnf166
RING finger protein 166 isoform X1.
    
 0.536
LOC100696985
HIV-1 Tat specific factor 1.
   
  
 0.522
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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