nop9 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Experiments

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[Homology]

Score

nop9

Uncharacterized protein. (615 aa)

Predicted Functional Partners:

bysl

0.985

heatr1

0.983

Rbm19

0.975

utp4

0.973

nop58

0.969

nol6

0.944

utp3

0.930

tbl3

0.920

pum3

0.916

pdcd11

0.916

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Rbm19	bysl	ENSONIP00000057354	ENSONIP00000023841	RNA binding motif protein 19.	Bystin-like.	0.963
Rbm19	heatr1	ENSONIP00000057354	ENSONIP00000024038	RNA binding motif protein 19.	HEAT repeat containing 1.	0.965
Rbm19	nol6	ENSONIP00000057354	ENSONIP00000038630	RNA binding motif protein 19.	Nucleolar protein 6.	0.832
Rbm19	nop58	ENSONIP00000057354	ENSONIP00000016595	RNA binding motif protein 19.	NOP58 ribonucleoprotein homolog (yeast).	0.893
Rbm19	nop9	ENSONIP00000057354	ENSONIP00000011424	RNA binding motif protein 19.	Uncharacterized protein.	0.975
Rbm19	pdcd11	ENSONIP00000057354	ENSONIP00000033787	RNA binding motif protein 19.	Programmed cell death 11.	0.927
Rbm19	pum3	ENSONIP00000057354	ENSONIP00000016024	RNA binding motif protein 19.	Pumilio RNA-binding family member 3.	0.858
Rbm19	tbl3	ENSONIP00000057354	ENSONIP00000002896	RNA binding motif protein 19.	Transducin (beta)-like 3.	0.812
Rbm19	utp3	ENSONIP00000057354	ENSONIP00000027680	RNA binding motif protein 19.	UTP3 small subunit processome component.	0.658
Rbm19	utp4	ENSONIP00000057354	ENSONIP00000005274	RNA binding motif protein 19.	UTP4 small subunit processome component.	0.958
bysl	Rbm19	ENSONIP00000023841	ENSONIP00000057354	Bystin-like.	RNA binding motif protein 19.	0.963
bysl	heatr1	ENSONIP00000023841	ENSONIP00000024038	Bystin-like.	HEAT repeat containing 1.	0.976
bysl	nol6	ENSONIP00000023841	ENSONIP00000038630	Bystin-like.	Nucleolar protein 6.	0.987
bysl	nop58	ENSONIP00000023841	ENSONIP00000016595	Bystin-like.	NOP58 ribonucleoprotein homolog (yeast).	0.988
bysl	nop9	ENSONIP00000023841	ENSONIP00000011424	Bystin-like.	Uncharacterized protein.	0.985
bysl	pdcd11	ENSONIP00000023841	ENSONIP00000033787	Bystin-like.	Programmed cell death 11.	0.991
bysl	pum3	ENSONIP00000023841	ENSONIP00000016024	Bystin-like.	Pumilio RNA-binding family member 3.	0.944
bysl	tbl3	ENSONIP00000023841	ENSONIP00000002896	Bystin-like.	Transducin (beta)-like 3.	0.987
bysl	utp3	ENSONIP00000023841	ENSONIP00000027680	Bystin-like.	UTP3 small subunit processome component.	0.991
bysl	utp4	ENSONIP00000023841	ENSONIP00000005274	Bystin-like.	UTP4 small subunit processome component.	0.988