STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam50aFamily with sequence similarity 50 member A. (370 aa)    
Predicted Functional Partners:
slu7
SLU7 homolog, splicing factor.
   
 
  0.925
lg12h9orf78
Zgc:103692.
    
 0.705
nkap
NFKB activating protein.
   
 
  0.697
alyref
Aly/REF export factor.
   
  0.693
prkrip1
PRKR interacting protein 1.
   
 
 0.672
fam32a
Family with sequence similarity 32 member A.
    
  0.671
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 
  0.671
ccdc12
Coiled-coil domain containing 12.
     
 0.667
Cwc22
MI domain-containing protein.
    
  0.665
sde2
SDE2 telomere maintenance homolog (S. pombe).
     
 0.663
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.