Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Col13a1Uncharacterized protein. (383 aa)    
Predicted Functional Partners:
I3KEZ4_ORENI
Collagen, type VI, alpha 1.
  
0.551
col1a2
Collagen, type I, alpha 2.
  
 
0.513
Col16a1
LAM_G_DOMAIN domain-containing protein.
  
   
 0.499
LOC100708902
Procollagen, type IX, alpha 2.
  
 
 
0.498
col9a3
Collagen, type IX, alpha 3.
  
 
0.496
lama4
Laminin, alpha 4.
   
 0.493
fndc3a
Fibronectin type III domain containing 3A.
     
 0.468
CERT1-2
Ceramide transporter 1.
      
 0.459
ENSONIP00000048514
annotation not available
  
     0.455
LOC100694532
Collagen, type I, alpha 1b.
  
  
0.448
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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