Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC100698617Homeobox protein. (295 aa)    
Predicted Functional Partners:
eno4
Enolase 4.
      
 0.844
gtf3c5
General transcription factor IIIC, polypeptide 5.
      
 0.687
LOC100703162
Crystallin, beta B2; Belongs to the beta/gamma-crystallin family.
      
 0.646
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 
 0.639
crybb1
Crystallin, beta B1; Belongs to the beta/gamma-crystallin family.
      
 0.592
LOC102081495
Leucine-rich repeats and transmembrane domains 2a.
      
 0.578
hspa12a
Heat shock protein 12A.
      
 0.577
ripk2
Receptor-interacting serine-threonine kinase 2.
      
 0.575
pum1
Pumilio RNA-binding family member 1.
    
   0.574
Gbf1
Golgi brefeldin A resistant guanine nucleotide exchange factor 1.
      
 0.572
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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