STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100693975Si:ch211-220i18.4; Belongs to the protein kinase superfamily. (414 aa)    
Predicted Functional Partners:
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.624
LOC100708876
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.624
SRSF6
Serine and arginine rich splicing factor 6.
   
 
 0.543
Srsf6
Serine/arginine-rich splicing factor 6 isoform X1.
   
 
 0.541
LOC100707620
Serine and arginine rich splicing factor 5b.
   
 
 0.535
LOC100690923
Serine/arginine-rich splicing factor 4 isoform X1.
   
 
 0.535
ENSONIP00000032775
annotation not available
   
 
 0.535
srsf5
Serine and arginine rich splicing factor 5a.
   
 
 0.535
ENSONIP00000038061
annotation not available
    
   0.523
ENSONIP00000076847
Cell division cycle 5-like protein.
    
   0.523
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.