Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100694250LHFPL tetraspan subfamily member 4a. (217 aa)    
Predicted Functional Partners:
Pcdh15
Protocadherin-related 15a.
    
 0.567
LOC102081275
Cadherin-related family member 5b.
    
 0.567
LOC102082062
Cadherin-related family member 5.
    
 0.567
I3KHV6_ORENI
Uncharacterized protein.
    
 0.567
TMC2
Transmembrane channel-like protein.
   
 0.523
Tmc3
Transmembrane channel-like protein.
   
 0.523
TMC1
Transmembrane channel-like protein.
   
 0.523
CIB2
Calcium and integrin binding family member 2.
     
 0.518
LOC100703082
Calcium and integrin binding family member 3.
     
 0.518
LOC100692410
Calcium and integrin binding family member 2.
     
 0.518
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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