Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
syt4Synaptotagmin IV. (471 aa)    
Predicted Functional Partners:
VAMP3
Vesicle associated membrane protein 3.
    
 0.759
syt1
Synaptotagmin Ia.
   
 0.727
LOC100700879
Synaptotagmin IIa.
   
 0.725
LOC100704658
Synaptotagmin Vb.
   
 0.725
LOC100699505
Uncharacterized protein.
   
 0.725
LOC100710649
Synaptotagmin Ib.
   
 0.718
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.665
LOC100706230
Vesicle-associated membrane protein 1.
   
 0.640
ENSONIP00000050976
Vesicle-associated membrane protein 2.
   
 0.640
LOC100706223
Zgc:92912.
   
 0.640
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.