Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100709386Charged multivesicular body protein 5a. (220 aa)    
Predicted Functional Partners:
chmp2a
Charged multivesicular body protein 2A.
   
 0.992
vta1
Vesicle (multivesicular body) trafficking 1.
   
 0.990
chmp3
Charged multivesicular body protein 3.
   
 0.985
chmp2b
Charged multivesicular body protein 2Bb.
   
 0.983
vps4a
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
   
 0.955
tm9sf1
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
   
 0.935
chmp7
Charged multivesicular body protein 7.
    
 0.929
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
   
 0.924
LOC100711005
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.924
chmp4b
Charged multivesicular body protein 4Bb.
   
 0.910
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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